I would suggest to spend the time setting it up on your own ... according to your own liking ... this way, you will learn the commands "by heart".
As I was looking at this setup I found it very far from how I set mine up ... this one doesn´t even make sense to me (in so many ways)!
(Is this the original way Giants/Saitek set this thing up?)
First thing that struck me ... run and jump should be bound to the left and right stick (click) ...
Crouch and "activate hand tool" should be on the buttons on the back of the wheel ...
Rotate hand tool should be on the left and right arrow ... (not on the pedals!!!)
I grouped the implement controls on the yellow buttons together with the green (wich are used to start the implement and lower it).
I set the red button on the joystick as "X" (implement function 2")
Blue buttons for lights ... (however beacons is the top orange button on the right)
Orange buttons for other functions such as camera, toggle map, send train etc ...
Purple buttons for GPS functions ...
In the Misch menus you can change the help icons to show the "game pad" instructions instead ... that should help you!